Package: SMUT 1.3
SMUT: Multi-SNP Mediation Intersection-Union Test
Testing the mediation effect of multiple SNPs on an outcome through a mediator.
Authors:
SMUT_1.3.tar.gz
SMUT_1.3.zip(r-4.7)SMUT_1.3.zip(r-4.6)SMUT_1.3.zip(r-4.5)
SMUT_1.3.tgz(r-4.6-x86_64)SMUT_1.3.tgz(r-4.6-arm64)SMUT_1.3.tgz(r-4.5-x86_64)SMUT_1.3.tgz(r-4.5-arm64)
SMUT_1.3.tar.gz(r-4.7-arm64)SMUT_1.3.tar.gz(r-4.7-x86_64)SMUT_1.3.tar.gz(r-4.6-arm64)SMUT_1.3.tar.gz(r-4.6-x86_64)
SMUT_1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SMUT/json (API)
| # Install 'SMUT' in R: |
| install.packages('SMUT', repos = c('https://wjzhong.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wjzhong/smut/issues
Datasets:
- Genotype_data - Example genotype data for SMUT
Last updated from:492c1c6553. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 130 | ||
| linux-devel-x86_64 | OK | 181 | ||
| source / vignettes | OK | 187 | ||
| linux-release-arm64 | OK | 136 | ||
| linux-release-x86_64 | OK | 134 | ||
| macos-release-arm64 | OK | 155 | ||
| macos-release-x86_64 | OK | 280 | ||
| macos-oldrel-arm64 | OK | 229 | ||
| macos-oldrel-x86_64 | OK | 313 | ||
| windows-devel | OK | 119 | ||
| windows-release | OK | 136 | ||
| windows-oldrel | OK | 173 | ||
| wasm-release | OK | 102 |
Exports:eigenMapMatMultGeneralized_Testing_coefficient_of_mediatorGSMUTSMUTTesting_coefficient_of_mediator
Dependencies:latticeMASSMatrixRcppRcppEigenRSpectraSKATSPAtest
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Matrix multiplication using RcppEigen | eigenMapMatMult |
| Testing coefficient of mediator in the outcome model for an outcome following an exponential family distribution or a survival outcome | Generalized_Testing_coefficient_of_mediator |
| Example genotype data for SMUT | Genotype_data |
| Generalized Multi-SNP Mediation Intersection-Union Test | GSMUT |
| Multi-SNP Mediation Intersection-Union Test | SMUT |
| Testing coefficient of mediator in the outcome model | Testing_coefficient_of_mediator |
